species:   Rhsol
pid:       PID0586
parent:    Rhi-milR-149
paralog:   
locus:     KB317749.1:155893-155976
matures:   ['UGGUCGGCACAUGUUGUAGGAG', 'CCUACUGCACCAGCUAUA']
srr:       SRR1994871
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994871.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994871.cram KB317749.1:155893-155976

12 out of bounds
51 alignments
45 proper strand
25 stranded perfect matches

*********************                             *************************         
GGACCUACUGCACCAGCUAUACAAGGGCGUGUUCAAAGACCACCUCUCAAAAUGGUCGGCACAUGUUGUAGGAGCAAAAGAGUU
(..(((((.(((((.(((((...((((.(((.((...)).)))))))....))))).))....))).)))))..).........
----------------------------------------------------UGGUCGGCACAUGUUGUAGGAG---------- l=22 a=0 c
---CCUACUGCACCAGCUAUA--------------------------------------------------------------- l=18 a=0 c*
----------------------------------------------------UGGUCGGCACAUGUUGUAGGAGC--------- l=23 a=6 ma
--ACCUACUGCACCAGCUAUA--------------------------------------------------------------- l=19 a=0 ma*

------ACUGCACCAGCUAUACAAGGGg-------------------------------------------------------- l=22 a=2 
-----------------UAUACAAGGGCGUGUUCAAAG---------------------------------------------- l=21 a=2 
-------------------UACAAGGGCGUGUUCAAAGA--------------------------------------------- l=20 a=1 
-------------------UACAAGGGCGUGUUCAAAGACC------------------------------------------- l=22 a=1 
----------------------------------------------UCAAAAUGGUCGGCACAUGUUGU--------------- l=23 a=1 
------------------------------------------------AAAAUGGUCGGCACAUGUUGUAGG------------ l=24 a=2 
--------------------------------------------------AAUGGUCGGCACAUGUUGUAGGAG---------- l=24 a=2 
--------------------------------------------------AAUGGUCaGCACAUGUUGUAGGAG---------- l=24 a=1 
--------------------------------------------------AAUGGUCGGCACAUGUUGUAGGAGC--------- l=25 a=1 
---------------------------------------------------AUGGUCGGCACAUGUUGUAGGA----------- l=22 a=1 
---------------------------------------------------AUGGUCGGCACAUGUUGUAGGAG---------- l=23 a=2 
---------------------------------------------------AUGGUCaGCACAUGUUGUAGGAGC--------- l=24 a=1 
----------------------------------------------------UGGUCGGCACAUGUUGUAG------------- l=19 a=2 
----------------------------------------------------UGGUCGGCACAUGUUGUAGu------------ l=20 a=11 
----------------------------------------------------UGGUCGGCACAUGUUGUAGa------------ l=20 a=1 
----------------------------------------------------UGGUCGGCACAUGUUGUAGG------------ l=20 a=1 
----------------------------------------------------UGGUCGGCACAUGUUGUAGGu----------- l=21 a=3 
----------------------------------------------------UGGUCGGCACAUGUUGUAGGAGC--------- l=23 a=6 (ma)
----------------------------------------------------UGGUCaGCACAUGUUGUAGGAGC--------- l=23 a=1 
-------------------------------------------------------UCGGCACAUGUUGUAGGAGCA-------- l=21 a=1 
-----------------------------------------------------------CACAUGUUGUAGGAGCAAAAGAG-- l=23 a=2 

mb-01111
ax-1001011
ku-01
ss-111111101000
fn-111
